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PUBLICATIONS

2022
2022

  1. McCaughey, C.S., Trebino, M.A., Yildiz, F.H., Sanchez, L.M., (2022). Utilizing imaging mass spectrometry to analyze microbial biofilm chemical responses to exogenous compounds. pp. 281–304. https://doi.org/10.1016/bs.mie.2021.11.014

2021
2021

  1. Tan, K., Teschler, J.K., Wu, R., Jedrzejczak, R.P., Zhou, M., Shuvalova, L.A., Endres, M.J., Welk, L.F., Kwon, K., Anderson, W.F., Satchell, K.J.F., Yildiz, F.H., Joachimiak, A., (2021). Sensor Domain of Histidine Kinase VxrA of Vibrio cholerae: Hairpin-Swapped Dimer and Its Conformational Change. J. Bacteriol. 203. https://doi.org/10.1128/JB.00643-20
     

  2. Trebino, M.A., Shingare, R.D., Macmillan, J.B., Yildiz, F.H., (2021). Strategies and approaches for discovery of small molecule disruptors of biofilm physiology. Molecules 26. https://doi.org/10.3390/molecules26154582

2020

  1. Schwechheimer C, Hebert K, Tripathi S, Singh PK, Floyd KA, Brown ER, Porcella ME, Osorio J, Kiblen JTM, Pagliai FA, Drescher K, Rubin SM#, Yildiz FH#. (2020) A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae.  PLoS Pathog. 16(8):e1008745. doi:10.1371/journal.ppat.1008745. (# co-corresponding author).
     

  2. Joshi A, Mahmoud SA, Kim SK, Ogdahl JL, Lee VT, Chien P, Yildiz FH. (2020) c-di-GMP inhibits LonA-dependent proteolysis of TfoY in Vibrio cholerae. PLoS Genet. 16(6):e1008897. doi: 10.1371/journal.pgen.1008897. 
     

  3. Gallego-Hernandez, AL*, DePas, WH*, Park JH*, Teschler, JK*, Hartmann, R, Jeckel, H, Drescher, K, Beyhan, S, Newman, DK#, Yildiz FH#. (2020) Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity, Proceedings of the National Academy of Sciences USA Apr 30. pii: 201916571. doi:10.1073/pnas.1916571117, PMID: 32355001 (* Equal Contributions, # co-corresponding author)
     

  4. Wu DC*, Zamorano-Sánchez D*, Pagliai FA, Park JH, Floyd KA, Lee CK, Kitts G, Rose CB, Bilotta EM, Wong GCL, Yildiz FH. (2020) Reciprocal c-di-GMP signaling: Incomplete flagellum biogenesis triggers c-di-GMP signaling pathways that promote biofilm formation. PLoS Genetics. 16(3): e1008703. doi:10.1371/journal.pgen.1008703. (* Equal Contributions) 
     

  5. Floyd KA, Lee CK, Xian W, Nametalla M, Valentine A, Crair B, Zhu S, Hughes HQ, Chlebek JL, Wu DC, Hwan Park J, Farhat AM, Lomba CJ, Ellison CK, Brun YV, Campos-Gomez J, Dalia AB, Liu J, Biais N, Wong GCL#, Yildiz FH#. (2020) c-di-GMP modulates type IV MSHA pilus retraction and surface attachment in Vibrio cholerae. Nature Communications. 11(1):1549. doi: 10.1038/s41467-020-15331-8. (# co-corresponding author)
     

  6. Dippel AB, Anderson WA, Park JH, Yildiz FH, Hammond MC. (2020) Development of Ratiometric Bioluminescent Sensors for in Vivo Detection of Bacterial Signaling. ACS Chem Biol. doi: 10.1021/acschembio.9b00800. PMID: 32186367
     

  7. Hartmann R, Jeckel H, Jelli E, Singh PK, Vaidya S, Bayer M, Rode DKH, Vidakovic L, Díaz-Pascual F, Fong JCN, Dragoš A, Besharova O, Thöming JG, Netter N, Häussler S, Nadell CD, Sourjik V, Kovács AT, Yildiz FH, Drescher K. (2020) Quantitative image analysis of microbial communities with BiofilmQ. Nature Microbiology (In Press). 
     

  8. Floyd KA# and Yildiz, FH. (2020) Deciphering the c-di-GMP-mediated motile to sessile transition in Vibrio cholerae. Physical Biology (# corresponding author)

2020
2019

  1. Kitts G*, Giglio KM*, Zamorano-Sánchez D*, Park JH, Townsley L, Cooley RB, Wucher BR, Klose K, Nadell CD, Yildiz FH #, and Sondermann H #. (2019) A conserved regulatory circuit controls large adhesins in Vibrio cholerae. mBio 10(6). pii: e02822-19. doi: 10.1128/mBio.02822-19 (* Equal Contributions, # co-corresponding author)
     

  2. Díaz-Pascual F, Hartmann R, Lempp M, Vidakovic L, Song B, Jeckel H, Thormann KM, Yildiz FH, Dunkel J, Link H, Nadell CD, Drescher K. (2019) Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function. Nature Microbiology. 4(12):2136-2145. doi: 10.1038/s41564-019-0579-2.
     

  3. Meza-Villezcas A, Gallego-Hernández AL, Yildiz FH, Jaime-Acuña OE, Raymond-Herrera O, Huerta-Saquero A. (2019) Effect of antimicrobial nanocomposites on Vibrio cholerae lifestyles: Pellicle biofilm, planktonic and surface-attached biofilm. PLoS One. 14(6): e0217869. doi: 10.1371/journal.pone.0217869
     

  4. Zamorano-Sánchez D, Xian W, Lee CK, Salinas M, Thongsomboon W, Cegelski L, Wong GCL#, Yildiz FH#. (2019) Functional Specialization in Vibrio cholerae Diguanylate Cyclases: Distinct Modes of Motility Suppression and c-di-GMP Production. mBio. 10(2). pii: e00670-19. doi: 10.1128/mBio.00670-19. (# co-corresponding author)

2019
2018

  1. Cheng AT, Zamorano-Sánchez D, Teschler JK, Wu D, Yildiz FH. (2018) NtrC Adds a New Node to the Complex Regulatory Network of Biofilm Formation and vps Expression in Vibrio cholerae. Journal Bacteriology. 10;200(15). pii: e00025-18. doi: 10.1128/JB.00025-18.
     

  2. Warner CJA*., Salinas M*, Zamorano-Sánchez D*, Bray WM, Lokey RS, Yildiz FH#; Linington RG.# (2018) The Bioactive Lipid (S)-Sebastenoic Acid Impacts motility and dispersion in Vibrio cholerae. Canadian Journal of Chemistry, 96, 196 - 203. doi: 10.1139/cjc-2017-0334. (* Equal Contributions, # co-corresponding author) (UCSC Undergraduates are underlined) 
     

  3. Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T. (2018) Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae. PLoS Genetics. 14(3): e1007251. doi: 10.1371/journal.pgen.1007251.

2018
2017

  1. Fong JC, Rogers A, Michael AK, Parsley NC, Cornell WC, Lin YC, Singh PK, Hartmann R, Drescher K, Vinogradov E, Dietrich LE, Partch CL*, Yildiz FH*. (2017) Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms. Elife. 6. pii: e26163. doi: 10.7554/eLife.26163. (* co-corresponding authors) 
     

  2. Teschler JK, Cheng AT, Yildiz FH. (2017) The Two-Component Signal Transduction System VxrAB Positively Regulates Vibrio cholerae Biofilm Formation. Journal of Bacteriology. 199(18). pii: e00139-17. doi: 10.1128/JB.00139-17. 
     

  3. Conner JG, Zamorano-Sánchez D, Park JH, Sondermann H, Yildiz FH. (2017) The ins and outs of cyclic di-GMP signaling in Vibrio cholerae. Current Opinion in Microbiology. 36:20-29.
     

  4. Joshi A, Kostiuk B, Rogers A, Teschler J, Pukatzki S, Yildiz FH. (2017) Rules of Engagement: The Type VI Secretion System in Vibrio cholerae. Trends in Microbiology. 25(4):267-279. 

2017
2016

  1. Wang YC, Chin KH, Tu ZL, He J, Jones CJ, Sanchez DZ, Yildiz FH, Galperin MY, Chou SH. (2016) Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain. Nature Communications. 7:12481. doi: 10.1038/ncomms12481
     

  2. Satchell KJ, Jones CJ, Wong J, Queen J, Agarwal S, Yildiz FH. (2016) Phenotypic Analysis Reveals that the 2010 Haiti Cholera Epidemic Is Linked to a Hypervirulent Strain. Infection and Immunity. 84(9):2473-81.
     

  3. Conner JG, Teschler JK, Jones CJ, Yildiz FH. (2016) Staying Alive: Vibrio cholerae's Cycle of Environmental Survival, Transmission, and Dissemination. Microbiology Spectrum. 4(2). (doi: 10.1128/microbiolspec.VMBF-0015-2015.)
     

  4. Townsley L, Sison Mangus MP, Mehic S, Yildiz FH. (2016) Response of Vibrio cholerae to Low-Temperature Shifts: CspV Regulation of Type VI Secretion, Biofilm Formation, and Association with Zooplankton. Applied and Environmental Microbiology. 82 (14):4441-52. 
     

  5. Sanchez LM*, Cheng AT*, Warner CJ*, Townsley L, Peach KC, Navarro G, Shikuma NJ, Bray WM, Riener RM, Yildiz FH, Linington RG. (2016) Biofilm Formation and Detachment in Gram-Negative Pathogens Is Modulated by Select Bile Acids. PLoS One. 11(3): e0149603. (*These authors contributed equally to this work.)
     

  6. Visick KL, Schembri MA, Yildiz FH, Ghigo JM. (2016) Biofilms 2015: Multidisciplinary Approaches Shed Light into Microbial Life on Surfaces. Journal of Bacteriology. 198(19):2553-63. 
     

  7. Bennett RR, Lee CK, De Anda J, Nealson KH, Yildiz FH, O'Toole GA, Wong GC, Golestanian R. (2016) Species-dependent hydrodynamics of flagellum-tethered bacteria in early biofilm development. Journal of the Royal Society Interface. 115:20150966.
     

  8. Rogers A, Townsley L, Gallego-Hernandez AL, Beyhan S, Kwuan L, Yildiz FH. (2016) The LonA Protease Regulates Biofilm Formation, Motility, Virulence, and the Type VI Secretion System in Vibrio cholerae. Journal of Bacteriology. 198(6):973-85. (UCSC Undergraduates are underlined)

2016
2015

  1. Roelofs KG*, Jones CJ*, Helman SR*, Shang X, Orr MW, Goodson JR, Galperin MY, Yildiz FH, Lee VT. (2015) Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems. PLoS Pathogens. 11 (10): e1005232. (*These authors contributed equally to this work.)
     

  2. Jones CJ, Utada A, Davis KR, Thongsomboon W, Zamorano Sanchez D, Banakar V, Cegelski L, Wong GC*, Yildiz FH*. (2015) C-di-GMP Regulates Motile to Sessile Transition by Modulating MshA Pili Biogenesis and Near-Surface Motility Behavior in Vibrio cholerae. PLoS Pathogens. 11(10): e1005068. (*Co-corresponding authors)
     

  3. Ruhe ZC, Townsley L, Wallace AB, King A, Van der Woude MW, Low DA, Yildiz FH, Hayes CS. (2015) CdiA promotes receptor-independent intercellular adhesion. Molecular Microbiology. 98(1):175-92.
     

  4. Fong JN, Yildiz FH. (2015) Biofilm Matrix Proteins. Microbiology Spectrum. 2015 3(2). (doi: 10.1128/microbiolspec. MB-0004-2014). (Previously published as a book chapter by the ASM and was counted during the last review)
     

  5. Hengge R, Gründling A, Jenal U, Ryan R, Yildiz F. (2015) Bacterial Signal Transduction by Cyclic Di-GMP and Other Nucleotide Second Messengers. Journal of Bacteriology. 198(1):15-26.
     

  6. Cheng AT, Ottemann KM, Yildiz FH. (2015) Vibrio cholerae Response Regulator VxrB Controls Colonization and Regulates the Type VI Secretion System. PLoS Pathogens. 11(5):e1004933.
     

  7. Teschler JK, Zamorano-Sánchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH. (2015) Living in the matrix: assembly and control of Vibrio cholerae biofilms. Nature Review of Microbiology. 13(5):255-68.
     

  8. Townsley L, Yildiz FH. (2015) Temperature affects c-di-GMP signaling and biofilm formation in Vibrio cholerae. Environmental Microbiology. (11):4290-305.
     

  9. Zamorano-Sánchez D, Fong JC, Kilic S, Erill I, Yildiz FH. (2015) Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae. Journal of Bacteriology. 197(7):1221-35.
     

  10. Bilecen K, Fong JC, Cheng A, Jones CJ, Zamorano-Sánchez D, Yildiz FH. (2015) Polymyxin B resistance and biofilm formation in Vibrio cholerae are controlled by the response regulator CarR. Infection and Immunity. 83(3):1199-209.
     

  11. Warner CJ, Cheng AT, Yildiz FH, Linington RG. (2015) Development of benzo [1,4]oxazines as biofilm inhibitors and dispersal agents against Vibrio cholerae. Chemical communications (Cambridge, England). 51(7):1305-8.

2015
2014

  1. Hollenbeck, EC, Fong JC, Lim JY, Yildiz FH, Fuller GG, Cegelski L. (2014) Molecular Determinants of Mechanical Properties of V. cholerae Biofilms at the Air-Liquid Interface. Biophysical Journal. 107 (10):2245-52.
     

  2. Johnson TL, Fong,JC, Rule C, Rogers A, Yildiz FH, Sandkvist M.  (2014) The Type II secretion system delivers matrix proteins for biofilm formation by Vibrio cholerae. Journal of Bacteriology. 196 (24):4245-52. 
     

  3. Utada A, Bennett RR, Fong JC, Gibiansky ML, Yildiz FH #, Golestanian R#, Wong GCL#. (2014) Vibrio cholerae use pili and flagella synergistically to effect motility switching and conditional surface attachment. Nature Communications 19; 5:4913. doi: 10.1038/ncomms5913. (# co-corresponding authors)
     

  4. Song T, Sabharwal D, Gurung JM, Cheng AT, Sjöström AE, Yildiz FH, Uhlin BE, Wai SN. (2014) Vibrio cholerae utilizes direct sRNA regulation in expression of a biofilm matrix protein. PLoS One. 9 (7): e101280.
     

  5. Reichhardt C, Fong JC, Yildiz F, Cegelski L. (2014) Characterization of the Vibrio cholerae extracellular matrix: A top-down solid-state NMR approach. Biochim Biophys Acta. Jun 7. pii: S0005-2736(14)00208-9
     

  6. Yildiz F, Fong J, Sadovskaya I, Grard T, Vinogradov E. (2014) Structural characterization of the extracellular polysaccharide from Vibrio cholerae O1 El-Tor. PLoS One. 9 (1): e86751.
     

  7. Navarro G, Cheng AT, Peach KC, Bray WM, Bernan VS, Yildiz FH, Linington RG. (2014) Image-based 384-well high-throughput screening method for the discovery of skyllamycins A to C as biofilm inhibitors and inducers of biofilm detachment in Pseudomonas aeruginosa. Antimicrob Agents Chemother. 58(2):1092-9

2014
2013

  1. Peach KC, Cheng AT, Oliver AG, Yildiz FH, Linington RG. (2013) Discovery and Biological Characterization of the Auromomycin Chromophore as an Inhibitor of Biofilm Formation in Vibrio cholerae. ChemBioChem. 14(16):2209-15
     

  2. Giglio KM*, Fong JC*, Yildiz FH#, Sondermann H#. (2013) Structural basis for biofilm formation via the Vibrio cholerae matrix protein RbmA. Journal of Bacteriology 195(14):3277-86 (* equal contribution, # co-corresponding authors) 
     

  3. León B, Fong JC, Peach KC, Wong WR, Yildiz FH, Linington RG. (2013) Development of quinoline-based disruptors of biofilm formation against Vibrio cholerae. Org Lett. 15(6):1234-7. 
     

  4. Shikuma NJ, Davis KR, Fong JN, Yildiz FH. (2013) The transcriptional regulator, CosR, controls compatible solute biosynthesis and transport, motility and biofilm formation in Vibrio cholerae. Environmental Microbiology. 15(5):1387-99. 

2013
2012

  1. Berk V#, Fong JC, Dempsey GT, Develioglu ON, Zhuang X, Liphardt J, Yildiz FH#, Chu S#. (2012) Molecular architecture and assembly principles of Vibrio cholerae biofilms. Science. 337 (6091):236-9. (# co-corresponding authors)
     

  2. Shikuma NJ, Fong JC, Yildiz FH. (2012) Cellular levels and binding of c-di-GMP control subcellular localization and activity of the Vibrio cholerae transcriptional regulator VpsT. PLoS Pathog. 8(5): e1002719. 
     

  3. Sondermann H#, Shikuma NJ, Yildiz FH#. (2012) You've come a long way: c-di-GMP signaling. Current Opinion Microbiology. 15(2):140-6. (# co-corresponding authors)

2012
2011

  1. Samayoa J, Yildiz FH, Karplus K. (2011) Identification of prokaryotic small proteins using a comparative genomic approach. Bioinformatics. 27 (13):1765-71. 
     

  2. Peach KC, Bray WM, Shikuma NJ, Gassner NC, Lokey RS, Yildiz FH, Linington RG. (2011) An image-based 384-well high-throughput screening method for the discovery of biofilm inhibitors in Vibrio cholerae. Mol Biosyst. 7(4):1176-84.

2011
2010

  1. Richard AL, Withey JH, Beyhan S, Yildiz FH, DiRita VJ. (2010) The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Molecular Microbiology. 78(5):1171-81.
     

  2. Cinar HN, Kothary M, Datta AR, Tall BD, Sprando R, Bilecen K, Yildiz FH, McCardell B. (2010). Vibrio cholerae hemolysin is required for lethality, developmental delay, and intestinal vacuolation in Caenorhabditis elegans. PLoS One. 13: 5(7).
     

  3. Liu X, Beyhan S, Lim B, Linington RG, Yildiz FH. (2010) Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae. Journal of Bacteriology.  192 (18):4541-52.
     

  4. Fong JC, Syed KA, Klose KE, Yildiz FH. (2010) Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis. Microbiology. 156 (9):2757-69. 
     

  5. Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH#, Sondermann H#. (2010) Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science. 12: 327(5967):866-8. (# denotes co-corresponding author)

2010
2009

  1. Syed KA, Beyhan S, Correa N, Queen J, Liu J, Peng F, Satchell KJ, Yildiz FH, Klose KE. (2009) The Vibrio cholerae flagellar regulatory hierarchy controls expression of virulence factors. Journal of Bacteriology 191(21):6555-70.
     

  2. Sikora AE, Beyhan S, Bagdasarian M, Yildiz FH, Sandkvist M. (2009) Cell envelope perturbation induces oxidative stress and changes in iron homeostasis in Vibrio cholerae. Journal of Bacteriology. 191 (17):5398-408. 
     

  3. Shikuma NJ, Fong JC, Odell LS, Perchuk BS, Laub MT, Yildiz FH. (2009) Overexpression of VpsS, a hybrid sensor kinase, enhances biofilm formation in Vibrio cholerae. Journal of Bacteriology. 191 (16):5147-58. 
     

  4. Bilecen K, Yildiz FH. (2009) Identification of a calcium-controlled negative regulatory system affecting Vibrio cholerae biofilm formation. Environmental Microbiology. 11(8):2015-29. 
     

  5. Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH. (2009) Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae. Journal of Bacteriology 191(11):3504-16.
     

  6. Shikuma NJ, Yildiz FH. (2009) Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae. Journal of Bacteriology. 191 (13):4082-96. 
     

  7. Yildiz FH, Visick KL. (2009). Vibrio biofilms: so much the same yet so different. Trends in Microbiology. 17(3):109-18.
     

  8. Kanabar PN, Vaske CJ, Yeang CH, Yildiz FH, Stuart JM. (2009) Inferring disease-related pathways using a probabilistic epistasis model. Pac Symp Biocomput. 480-91.

2009
2008

  1. Beyhan S, Odell, L.S., and Yildiz FH. (2008) Identification and characterization of c-di-GMP signaling systems controlling rugosity in Vibrio cholerae.  Journal of Bacteriology.  190 (22):7392-405.
     

  2. Fong JC, Yildiz FH. (2008) Interplay between cyclic AMP-cyclic AMP receptor protein and cyclic di-GMP signaling in Vibrio cholerae biofilm formation. Journal of Bacteriology.  190 (20):6646-59. 
     

  3. Yildiz FH (2008) Cyclic dimeric GMP signaling and regulation of surface-associated developmental programs. Journal of Bacteriology. 190(3):781-3.

2008
2007

  1. Yildiz FH (2007) Processes controlling the transmission of bacterial pathogens in the environment.  Research in Microbiology. 158(3):195-202.
     

  2. Fong JC, Yildiz FH.  (2007) The rbmBCDEF gene cluster modulates development of rugose colony morphology and biofilm formation in Vibrio cholerae. Journal of Bacteriology. 189(6):2319-30.
     

  3. Beyhan S, Yildiz FH. (2007) Bacterial gene expression analysis using microarrays. J Vis Exp.(4):206. doi: 10.3791/206
     

  4. Beyhan S, Yildiz FH (2007) Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signaling pathway
    Molecular Microbiology. 63(4):995-1007.
     

  5. Lim B, Beyhan S, Yildiz FH (2007) Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae. Journal of Bacteriology. 189(6):2319-30.
     

  6. Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH (2007) Regulation of rugosity and biofilm formation in Vibrio cholerae: Comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR and hapR.  Journal of Bacteriology. 189(2):388-402.

2007
2006

  1. Beyhan S, Tischler AD, Camilli A, Yildiz FH. (2006) Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level. Journal of Bacteriology. 188 (10):3600-13.
     

  2. Beyhan S, Tischler AD, Camilli A, Yildiz FH (2006) Differences in gene expression between the classical and El Tor biotypes of Vibrio cholerae O1. Infection and Immunity. 74(6):3633-42.
     

  3. Lim B, Beyhan S, Meir J, Yildiz FH. (2006) Cyclic-di-GMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation. Molecular Microbiology. 60(2):331-48.
     

  4. Fong JC, Karplus K, Schoolnik GK, Yildiz FH. (2006) Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae. Journal of Bacteriology. 188(3):1049-59.

2006
2005

  1. Matz C, McDougald D, Moreno AM, Yung PY, Yildiz FH, Kjelleberg S (2005) Biofilm formation and phenotypic variation enhance predation-driven persistence of Vibrio cholerae. Proceedings of the National Academy of Sciences USA. 102 (46):16819-24.

2005
2004

  1. Yildiz FH, Liu XS, Heydorn A, Schoolnik, GK.  (2004). Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant. Molecular Microbiology. 53 (2): 497-515.
     

  2. Casper-Lindley C, Yildiz FH.  (2004) VpsT is a transcriptional regulator required for the rugose colonial morphology of Vibrio cholerae O1 El Tor.  Journal of Bacteriology. 186: 1574-78. 

2004
Publications Prior to UC Santa Cruz

  1. Yildiz FH, Dolganov NA, Schoolnik GK. (2001) VpsR, a member of the response regulators of the two-component regulatory systems, is required for expression of vps biosynthesis genes and the VPS associated phenotypes in Vibrio cholerae O1 El Tor. Journal of Bacteriology. 183: 1716-26. 
     

  2. Schoolnik GK, Yildiz FH. (2000) The complete genome sequence of Vibrio cholerae: a tale of two chromosomes and two lifestyles. Genome Biology 1(3): 1016.1-1016.3.
     

  3. Davies, JP*, Yildiz FH*, Grossman AR. (1999) Sac3, a Snf1-like serine/theronine kinase that positively and negatively regulates the responses of Chlamydomonas to sulfur limitation. The Plant Cell. 11:1179-1190. (* denotes equal contribution)
     

  4. Yildiz FH, and Schoolnik GK. (1999) Vibrio cholerae O1 E1 Tor: Identification of a gene cluster required for the rugose colony type; exopolysaccharide production, chlorine resistance, and biofilm formation. Proceedings of the National Academy of Sciences USA. 96: 4028-4033.
     

  5. Yildiz FH, and Schoolnik GK. (1998). Role of rpoS in stress survival and virulence of Vibrio cholerae. Journal of Bacteriology. 180:773-784.
     

  6. Yildiz FH, Davies JP, Grossman AR.  (1996) Sulfur availability and the Sac1 gene control adenosine triphosphate sulfurylase gene expression in Chlamydomonas reinhardtii. Plant Physiology. 112: 669-675.
     

  7. Davies JP, Yildiz FH, Grossman AR. (1996) Sac1, a putative regulator that is critical for survival of Chlamydomonas reinhardtii during sulfur deprivation.  EMBO Journal. 15: 2150-2159.
     

  8. Yildiz FH, Davies JP, Grossman AR.  (1994) Characterization of sulfate transport in Chlamydomonas reinhardtii during sulfur-limited and sulfur-sufficient growth.  Plant Physiology. 104: 981-987.
     

  9. Davies JP, Yildiz, FH, Grossman AR.  (1994) Mutants of Chlamydomonas with aberrant responses to sulfur deprivation.  The Plant Cell 6:  53-63.
     

  10. Yildiz FH, Gest H, Bauer CE.  (1992) Conservation of the photosynthetic gene cluster in Rhodospirillum centenum.  Molecular Microbiology 6: 2683-2691
     

  11. Yildiz FH, Gest H, Bauer CE.  (1992) Characterization of light-harvesting and reaction center complexes from Rhodospirillum centenum.  Research in Photosynthesis, Vol. III, 19-26.
     

  12. Yildiz FH, Gest H, Bauer CE. (1991) Genetic analysis of photosynthesis in Rhodospirillum centenum.  Journal of Bacteriology 173: 4163-4170
     

  13. Yildiz FH, Gest H, Bauer CE.  (1991) Attenuated effect of oxygen on photopigment biosynthesis in Rhodospirillum centenum.  Journal of Bacteriology 173: 5502-5506.

Prior UCSC
Book Chapters
Book Chapters

  1. Fong JC, and Yildiz, FH. (2014) Biofilm Matrix Proteins. In Microbial Biofilms, 2nd Edition.  Whiteley, Marvin and Matt Parsek Eds.  ASM Press, Washington DC.
     

  2. DC.Dziejman, M, and Yildiz FH. (2010). Genomics of Pathogenic Vibrio species.  Chapter 9. In Genomics of Foodborne Pathogens.  Wei Zhang & Martin Wiedmann Eds.  Springer New York.
     

  3. Beyhan S, and Yildiz, FH. (2009) Cyclic Di-GMP Signaling in Vibrio cholerae. Chapter 17. In the Second Messenger Cyclic Di-GMP.  Karen L. Visick and Alan J. Wolfe Eds.  ASM Press, Washington DC. 
     

  4. Yildiz, FH, and Kolter, R. (2008). Genetics and Microbiology of Biofilm formation by Vibrio cholerae.  Chapter 7.  In Vibrio cholerae: Genomics and Molecular Biology, Shah M. Faruque and G. Balakrish Nair, Eds. Caister Academic Press, Norfolk, UK.
     

  5. Flanders, JR, and Yildiz, FH.  (2004). Biofilms as a Reservoir for Disease, Chapter 17. In: Introduction to Biofilms: Conceptual Themes, George A. O'Toole and Mahmoud A. Ghannoum, eds.  ASM Press, Washington DC.
     

  6. Schoolnik GK, Voskuil MI, Schnappinger D, Yildiz FH., Meibom K, Dolganov AN, Wilson MA, Chong KH. (2000). Whole genome DNA microarray expression analysis of biofilm development by Vibrio cholerae O1 El Tor. In Microbial Growth in Biofilms, Part A. Doyle, R.J.,Eds San Diego, CA: Academic Press; Methods in Enzymology, Vol: 336:3-18.

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